PatchEpi: Epitope Prediction

Predict potential B-cell epitope surface patches from an antigen structure. Choose how to provide the antigen input below.

Antigen input

Select one input method. Uploading a FASTA file shows its sequence for review; uploading a PDB file displays its structure.

Antigen FASTA sequence

0 sequence(s) · 0 residue(s)

Advanced options

Configure PatchEpi inference options. Model and output paths are configured on the server.

Chains (blank = all)Minimum patch sizeBatch sizeNumber of workers

Predict structure for FASTA input (Boltz)Use MSA for FASTA inputGenerate PyMOL sessions

MSA URL

Add an antigen input to prepare a prediction.