MacroMolecule MD

In this part, MD simulation for a protein-only system with only canonical amino acids can be submitted. Please upload a protein PDB file that was prepared using our PDB manipulation toolkit.

Please upload a prepared PDB file

Job name

Job time (hours)

Force filed

AMBER ff14SB
Advanced Options

Simulation temperature (K)

Box size (Angstrom)

Water box

TIP3P

Salt Concentration (NaCl, M)

MD input parameter files sets

mdInFileSet0
Submit